Designing and generating a single-chain fragment variable (scFv) antibody against IL۲Rα (CD۲۵): An in silico and in vitro study

Publish Year: 1400
نوع سند: مقاله ژورنالی
زبان: English
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شناسه ملی سند علمی:

JR_IJBMS-24-3_011

تاریخ نمایه سازی: 6 اردیبهشت 1400

Abstract:

Objective(s): IL-۲Rα plays a critical role in maintaining immune function. However, expression and secretion of CD۲۵ in various malignant disorders and autoimmune diseases are now well established. Thus, CD۲۵ is considered an important target candidate for antibody-based therapy. This study aimed to find the most suitable linker peptide to construct a functional anti-CD۲۵ single-chain fragment variable (scFv) by bioinformatics studies and its production in a bacterial expression system. Materials and Methods: Here, the ۳D structures of the scFvs with different linkers were predicted and molecular dynamics simulation was performed to compare their structures and dynamics. Then, interactions between five models of scFv and human CD۲۵ were calculated via molecular docking. According to MD and docking results, the anti-CD۲۵ scFvs with (Gly۴Ser)۳ linker were constructed and cloned into pET-۲۲b(+). Then, recombinant plasmids were transformed into Escherichia coli Bl۲۱ (DE۳) for expression using IPTG and lactose as inducers. Anti-CD۲۵ scFv was purified from the periplasm and detected by SDS-PAGE and Western blot. Afterward, functionality was evaluated using ELISA.Results: In silico analysis showed that the model containing (Gly۴Ser)۳ as a linker has more stability compared with other linkers. The results of SDS-PAGE, Western blot, and ELISA confirmed the accuracy of anti-CD۲۵ scFv production and its ability to bind to the human CD۲۵. Conclusion: Conclusively, our work provides a theoretical and experimental basis for production of an anti-CD۲۵ scFv, which may be applied for various malignant disorders and autoimmune diseases.

Keywords:

CD۲۵ Daclizumab IL , ۲Rα Protein engineering Single , chain variable fragment (scFv)

Authors

Parnian Navabi

Department of Immunology, Faculty of Medicine, Isfahan University of Medical Sciences, Isfahan, Iran

Mohamad Reza Ganjalikhany

Department of Cell and Molecular Biology, Faculty of Biological Science and Technology, University of Isfahan, Isfahan, Iran

Sepideh Jafari

Department of Cell and Molecular Biology, Faculty of Biological Science and Technology, University of Isfahan, Isfahan, Iran

Moein Dehbashi

Division of Genetics, Department of Cell and Molecular Biology and Microbiology, Faculty of Biological Sciences and Technologies, University of Isfahan, Isfahan, Iran

Mazdak Ganjalikhani-Hakemi

Department of Immunology, Faculty of Medicine, Isfahan University of Medical Sciences, Isfahan, Iran

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  • 1. Flynn MJ, Hartley JA. The emerging role of anti-CD ...
  • 2. Du J, Yang H, Zhang D, Wang J, Guo ...
  • 3. de Marco A. Biotechnological applications of recombinant single-domain antibody ...
  • 4. Cheng J, Dul Q, Ren Y, Zhang B, Feng ...
  • 5. Pucca MB, Bertolini TB, Barbosa JE, Galina SVR, Porto ...
  • 6. Frenzel A, Frode D, Meyer T, Schirrmann T, Hust ...
  • 7. Jordan E, Hust M, Roth A, Biedendieck R, Schirrmann ...
  • 8. Bird RE, Hardman KD, Jacobson JW, Johnson S, Kaufman ...
  • 9. Bahara NHH, Tye GJ, Choong YS, Ong EBB, Ismail ...
  • 10.    Cheng J, Du Q, Zhang X, Ren Y, Zhang ...
  • 11.    Fang M, Jiang X, Yang Z, Yu X, Yin ...
  • 12.    Chen H, Wu B, Zhang T, Jia J, Lu ...
  • 13.    Abdurakhmonov IY. Bioinformatics: Basics, Development, and Future: InTech; 2016. ...
  • 14.    Tang Z-J, Liao W-J, Yu B, Zhong J-X, Zhu ...
  • 15.    Whitlow M, Bell BA, Feng SL, Filpula D, Hardman ...
  • 16.    Whitlow M, Filpula D. Single-chain Fv proteins and their ...
  • 17.    Lilly M, Fierobe HP, Van Zyl WH, Volschenk H. ...
  • 18.    Yang H, Wang J, Du J, Zhong C, Zhang ...
  • 19.    Kim DE, Chivian D, Baker D. Protein structure prediction ...
  • 20.    Guex N, Peitsch MC. SWISS-MODEL and the Swiss-Pdb Viewer: ...
  • 21.    Pettersen EF, Goddard TD, Huang CC, Couch GS, Greenblatt ...
  • 22.    Humphrey W, Dalke A, Schulten K. VMD: visual molecular ...
  • 23.    Salomon-Ferrer R, Case DA, Walker RC. An overview of ...
  • 24.    Case DA, Cheatham III TE, Darden T, Gohlke H, ...
  • 25.    Essmann U, Perera L, Berkowitz ML, Darden T, Lee ...
  • 26.    Loncharich RJ, Brooks BR, Pastor RW. Langevin dynamics of ...
  • 27.    Baspinar A, Cukuroglu E, Nussinov R, Keskin O, Gursoy ...
  • 28.    Beatty JD, Beatty BG, Vlahos WG. Measurement of monoclonal ...
  • 29.    Dondelinger M, Filée P, Sauvage E, Quinting B, Muyldermans ...
  • 30.    Queen C, Schneider WP, Selick HE, Payne PW, Landolfi ...
  • 31.    AlDeghaither D, Smaglo BG, Weiner LM. Beyond peptides and ...
  • 32.    Brinkmann U, Kontermann RE, Editors. The making of bispecific ...
  • 33.    Frenzel A, Hust M, Schirrmann T. Expression of recombinant ...
  • 34.    Ahmad ZA, Yeap SK, Ali AM, Ho WY, Alitheen ...
  • 35.    Kim G-B, Wang Z, Liu YY, Stavrou S, Mathias ...
  • 36.    Miller BR, Demarest SJ, Lugovskoy A, Huang F, Wu ...
  • 37.    Vaks L, Benhar I. Production of stabilized scFv antibody ...
  • 38.    Schmidt F. Recombinant expression systems in the pharmaceutical industry. ...
  • 39.    Miller KD, Weaver-Feldhaus J, Gray SA, Siegel RW, Feldhaus ...
  • 40.    Verma R, Boleti E, George A. Antibody engineering: comparison ...
  • 41.    Liu A, Ye Y, Chen W, Wang X, Chen ...
  • 42.    Spadiut O, Capone S, Krainer F, Glieder A, Herwig ...
  • 43.    Lefranc M-P, Giudicelli V, Kaas Q, Duprat E, Jabado-Michaloud ...
  • 44.    Lee YJ, Jeong KJ. Challenges to production of antibodies ...
  • 45.    Butler M, Spearman M. The choice of mammalian cell ...
  • 46.    Vendel MC, Favis M, Snyder WB, Huang F, Capili ...
  • 47.    Joosten V, Lokman C, Van den Hondel CA, Punt ...
  • 48.    Shi J, Wan Y, Shi S, Zi J, Guan ...
  • 49.    Montoliu-Gaya L, Martínez JC, Villegas S. Understanding the contribution ...
  • 50.    Guglielmi L, Martineau P. Expression of single-chain Fv fragments ...
  • 51.    Miethe S, Meyer T, Wöhl-Bruhn S, Frenzel A, Schirrmann ...
  • 52.    Chi WJ, Kim H, Yoo H, Kim YP, Hong ...
  • 53.    Dewi K, Retnoningrum D, Riani C, Fuad A. Construction ...
  • 54.    Singh A, Upadhyay V, Upadhyay AK, Singh SM, Panda ...
  • 55.    Lin L, Li L, Zhou C, Li J, Liu ...
  • 56.    Reusch U, Harrington KH, Gudgeon CJ, Fucek I, Ellwanger ...
  • 57.    Renaut L, Monnet C, Dubreuil O, Zaki O, Crozet ...
  • 58.    Tsurushita N, Hinton PR, Kumar S. Design of humanized ...
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