Genetic diversity in the Persian sturgeon, Acipenser percicus, from the south Caspian Sea based on mitochondrial DNA sequences of the control region

Publish Year: 1390
نوع سند: مقاله ژورنالی
زبان: English
View: 48

This Paper With 9 Page And PDF Format Ready To Download

  • Certificate
  • من نویسنده این مقاله هستم

استخراج به نرم افزارهای پژوهشی:

لینک ثابت به این Paper:

شناسه ملی سند علمی:

JR_CJES-9-1_009

تاریخ نمایه سازی: 21 خرداد 1403

Abstract:

The Persian sturgeon, Acipenser persicus (Borodin, ۱۸۹۷), is an economically important species, which mainly inhabits the Caspian Sea. However, little is known about its population genetic structure. In this study, variation in nucleotide sequences of the mitochondrial DNA (mtDNA) control region of wild stock Persian sturgeon was determined to assess the genetic diversity among different natural populations of this species. The fish (n = ۴۶) were collected from four sites (Astara, Sefidrood, Noshahr and Bandare- Turkaman) in the south Caspian Sea. As a result ۶ haplotypes and ۴۴ variable sites were found. The average haplotype diversity (h) and nucleotide diversity (?) were ۰.۶۴۰?۰.۰۲۸ and ۰.۰۴۴۲?۰.۰۱۱, respectively. Analysis of molecular variance (AMOVA) demonstrated that most variations occurred within samples, and the difference between the populations from Astara and Noshahr or Bandare- Turkaman was not significant (p <۰.۰۰۱). Estimates of gene flow indicated reproductive isolation between the Sefidrood River population and the other collections. The divergence might be related to geographical isolation. The results are consistent with the findings from PCR-RFLP analysis (PCR-RFLP) and suggest considerable genetic diversity of the population from Sefidrood River.   REFERENCES Ataei, M. (۲۰۰۴). Investigation of genetic variation in Persian sturgeon, Acipenser persicus, in Sefidrood river using PCRRFLP technique. Thesis in Master of Science. The University of Guilan, Iran, ۱۵۶ p. (In Persian). Avise J.C. (۱۹۹۴) Molecular Markers, Natural History, and Evolution. Chapman and Hall, New York, NY, ۵۱۱ p. Billington N. and Hebert D.N. (۱۹۹۱) Mitochondrial DNA diversity in fishes and its implications for introductions. Can. J. Fish. Aquat. Sci. ۴۸ (Suppllement ۱), ۸۰–۹۴.  Birstein V.J. (۱۹۹۳) Sturgeons and paddlefishes: threatened fishes in need of conservation. Conserv. Biol. ۷, ۷۷۳-۷۸۷.  Birstein V.I, Bemis W.E, and Waldman J.R. (۱۹۹۷) The threatened status of Acipenseriform species: a summary. Environmen. Biol. Fish. ۴۸, ۴۲۷-۴۳۵. Brown W.M. (۱۹۸۵). The mitochondrial genome of animals. In: MacIntyre, R.J. (Ed.), Molecular Evolutionary Genetics. Plenum, New York, NY, pp. ۹۵–۱۳۰. Brown J.R., Beckenbach A.T. and Smith M.J. (۱۹۹۳) Intraspecific DNA sequence variation of the mitochondrial control region of white sturgeon (Acipenser transmontanus). Mol. Biol. Evol. ۱۰, ۳۲۶– ۳۴۱. Brown K.H. (۲۰۰۸) Fish mitochondrial genomics: sequence, inheritance and functional variation. J. Fish Biol. ۷۲, ۳۵۵– ۳۷۴. Excoffier L., Smouse P.E., and Quattro J.M. (۱۹۹۲) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics ۱۳۱, ۴۷۹-۴۹۱. Excoffier L., Laval G., and Schneider S. (۲۰۰۵) Arlequin Ver. ۳.۰: an integrated software package for population genetics data analysis. Evol. Bioinform. ۱, ۴۷–۵۰. Grunwald C., Stabile, J., Waldman, J.R., Gross, R., Wirgin, I. (۲۰۰۲) Population genetics of shortnose sturgeon Acipenser brevirostrum based on mitochondrial DNA control region sequences. Mol. Ecol., ۱۱, ۱۸۸۵-۱۸۹۸. Hillis, D and Moritz, M. C. (۱۹۹۰). Molecular taxonomic. Sinauer associate, Inc. Publishers. Massachusetts. Hudson R.R., Slatkin M., Maddison W.P. (۱۹۹۲) Estimation of levels of gene flow from DNA sequence data. Genetics ۱۳۲, ۵۸۳–۵۸۹. Kimura M. (۱۹۸۰) A simple method for estimating evolutionary rate of base substitution through comparative studies of nucleotide sequences. J. Mol. Evol. ۱۶, ۱۱۱–۱۲۰. KhoshKholgh M., Pourkazemi M., Kamali A., Rezvani Gilkolaie S. (۲۰۰۸) Investigation on genetic structure of Russian sturgeon (Acipenser gueldenstaedtii) populations of the north (Volga River) and south Caspian Sea (coasts of Iran and Turkmenistan) using microsatellite techniques. Iran. Sci. Fish. J. ۱۶, ۶۹-۸۰. Kumar S, Tamura K. & Nei M. (۲۰۰۴) MEGA۳: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform. ۵, ۱۵۰–۱۶۳. Liua Z.J.& J.F. Cordes. (۲۰۰۴) DNA marker technologies and their applications in aquaculture genetics. Aquaculture ۲۳۸, ۱ –۳۷. Ludwig, A., May, B., Debus, L., and Jenneckens, I. (۲۰۰۰) Heteroplasmy in the mtDNA Control Region of Sturgeon (Acipenser, Huso and Scaphirhynchus). Genetics ۱۵۶: ۱۹۳۳–۱۹۴۷. Ludwig, A. (۲۰۰۶) A sturgeon view on conservation genetics. Europ. J. Wild. Res. ۵۲, ۳-۸. Moghim M., Kor D., Tavakolieshkalak M. & Khoshghalb M.B. (۲۰۰۶) Stock status of Persian sturgeon (Acipenser persicus, Borodin ۱۸۹۷) along the Iranian coast of the Caspian Sea. J. Appl. Ichthyol. ۲۲, ۹۹-۱۰۷. Mugue, N.S., Barmintseva, A. E., Rastorguev, S. M., Mugue, V. N. and Barmintsev, V. A. (۲۰۰۸) Polymorphism of the Mitochondrial DNA Control Region in Eight Sturgeon Species and Development of a System for DNABased Species Identification. Russ. J. Genet. ۲۰۰۸. ۴۴, ۷۹۳–۷۹۸. Norouzi M., Porkazemi M., Keyvan A., Fatemi S.M.R. and Kazemi B. (۲۰۰۸) Population genetic structure of Stellate sturgeon (Acipenser stellatus) in the south Caspian Sea using microsatellite markers. J. Fish. Aquat. Sci. ۳, ۱۵۸-۱۶۶. Ong T.L., Stabile J., Waldman J.R. and Wirgin I. (۱۹۹۶) Genetic divergence of Atlantic and Gulf of Mexico sturgeon based on sequence analysis of the mtDNA control region. Copeia ۱۹۹۶, ۴۶۴–۴۶۹. Pikitch E.K., Doukakis P., Lauck L., Chakrabarty P. & Erickson D.L. (۲۰۰۵) Status, trends and management of sturgeon and paddlefish fisheries. Fish Fish. ۶, ۲۳۳–۲۶۵. Pourkazemi M. (۱۹۹۶) Molecular and biochemical genetic analysis of sturgeon stocks from the South Caspian Sea. PhD Dissertation, University of Wales, Swansea. Pourkazemi M., Skibinski, D.O.F. & Beardmore J.A., (۱۹۹۹). Application of mtDNA d-loop region for the study of Russian sturgeon population structure from Iranian coastline of the Caspian Sea. J. Appl. Ichthyol.۱۵, ۲۳–۲۸. Pourkazemi M., Skibinski D.O.F. & Beardmore A. (۲۰۰۰) A Preliminary study on phylogenetic relationships between five sturgeon species in the Iranian coastline of the Caspian Sea. Iran. J. Fish. Sci. ۲, ۹۸-۱۰۹. Qasemi A., Pourkazemi M. & Kalbasi M. (۲۰۰۴) Genetic variation in ship sturgeon (Acipenser nudiventris) from the south Caspian Sea using PCR-RELP. Iran. Sci. Fish. J.۴, ۱۵۱-۱۶۳. Rezvani Gilkolaei S. (۱۹۹۷) Molecular population genetic studies of sturgeon species in the South Caspian Sea. PhD Dissertation, University of Wales, Swansea. Rezvani Gilkolaie S. (۲۰۰۰) study of mtDNA variation of Russian sturgeon population from the south Caspian Sea using RFPL analysis of PCR amplified ND۵/۶ gene regiens. Iran. J. Fish. Sci. ۲, ۸۷-۹۸. Rozas J, Sa´nchez-DelBarrio J.C, Messeguer X.& Rozas R. (۲۰۰۳) DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics ۱۹, ۲۴۹۶–۲۴۹۷. Safari R., Pourkazemi M., Rezvani Gilkolaie S. & Shabani A., (۲۰۰۸) Genetic relationships of Iranian coastline ship sturgeon, Acipenser nudiventris, samples and Ural population based on microsatellite DNA. Iran. J. Fish. Sci. ۷, ۲۲۹-۲۴۱. Shabani A., Pourkazemi M., Kamali A., Rezvani Gilkolaie S. & Vitskayal V.V. (۲۰۰۳) Study of Genetic variation in stellate sturgeon (Acipenser stellatus) from north (Volga river) and south (Gorganrud river) Caspian Sea using PCR-RFLP of mitochondrial ND ۵/۶ gene. Iran. J. Mar. Sci. Tech. ۴, ۱۵۹-۱۶۹. Thompson J.D., Gibson TJ., Plewniak F., Jeanmougin F., Higgins D.G. (۱۹۹۷) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acid. Res. ۲۴, ۴۸۷۶–۴۸۸۲. Vecsei P. & Artyukhin E. (۲۰۰۱) Threatened fishes of the world: Acipenser persicus Borodin, ۱۸۹۷ (Acipenseridae) Environmen. Biol. Fish. ۶۱, ۱۶۰. Vlasenko A.D., Pavlov A.V. & Vasil’ev V.P. (۱۹۸۹) Acipenser persicus Borodin, ۱۸۹۷. In: The Freshwater Fishes of Europe. Vol. ۱. Pt. II. General Introduction to Fishes. Acipenseriformes (ed. J. Holcik). AULA-Verlag, Wiesbaden, pp. ۳۴۵–۳۶۶. Vodolazhskii D.I., Kornienko, I.V. & Voinova N.V. (۲۰۰۸) Hypervariability of the D-loop Region in Mitochondrial DNA of Russian Sturgeon Acipenser gueldenstaedtii (Acipenseriformes, Acipenseridae). J. Ichthyol. ۴۸, ۱۸۸-۱۹۷. Waldman J.R., Grunwald C., Stabile J. & Wirgin I. (۲۰۰۲) Impacts of life history and biogeography on genetic stock structure in Atlantic sturgeon, Acipenser oxyrinchus oxyrinchus, Gulf sturgeon A. oxyrinchus desotoi, and shortnose sturgeon, A. brevirostrum. J. Appl. Ichthyol.۱۸, ۵۰۹–۵۱۸. Weir B.S.& Cockerham C.C. (۱۹۸۴) Estimating F-statistics for the analysis of population structure. Evolution ۳۸, ۱۳۵۸–۱۳۷۰. Wirgin I., Stabile J.E. & Waldman J.R. (۱۹۹۷) Molecular analysis in the conservation of sturgeons and paddlefish. Environmen. Biol. Fish. ۴۸, ۳۸۵-۳۹۸. Wirgin I., Waldman J.R., Rosko L., Gross R., Collins M.R., Rogers S.G. & Stabile J. (۲۰۰۰) Genetic structure of Atlantic sturgeon populations based on mitochondrial DNA control region sequences. Trans. American Fish. Soc. ۱۲۹, ۴۷۶-۴۸۶. Wirgin I., Waldman J., Stabile, J., Lubinski, B. & King T., (۲۰۰۲) Comparison of mitochondrial DNA control region sequence and microsatellite DNA analyses in estimating population structure and gene flow rates in Atlantic sturgeon Acipenser oxyrinchus. J. Appl. Ichthyol.۱۸, ۳۱۳–۳۱۹. Wirgin I., Grunwald C., Carlson E., Stabile J., Peterson D. & Waldman J. (۲۰۰۵) Range-wide population structure of shortnose sturgeon Acipenser brevirostrum based on sequence analysis of the mitochondrial DNA control region. Estuaries ۲۸, ۴۰۶-۴۲۱.

Authors

M. Khoshkholgh

Dept. of Fisheries, Faculty of Natural Resources, University of Guilan, P.O. Box ۱۱۴۴, Sowmehsara, Iran.

M. Pourkazemi

International Sturgeon Research Institute, P.O. Box ۴۱۶۳۵-۳۴۶۴, Rasht, Iran.

S. Nazari

Dept. of Fisheries, Faculty of Natural Resources, University of Guilan, P.O. Box ۱۱۴۴, Sowmehsara, Iran.

L. Azizzadeh Pormehr

Dept. of Fisheries, Faculty of Natural Resources, University of Guilan, P.O. Box ۱۱۴۴, Sowmehsara, Iran.

مراجع و منابع این Paper:

لیست زیر مراجع و منابع استفاده شده در این Paper را نمایش می دهد. این مراجع به صورت کاملا ماشینی و بر اساس هوش مصنوعی استخراج شده اند و لذا ممکن است دارای اشکالاتی باشند که به مرور زمان دقت استخراج این محتوا افزایش می یابد. مراجعی که مقالات مربوط به آنها در سیویلیکا نمایه شده و پیدا شده اند، به خود Paper لینک شده اند :
  • Ataei, M. (۲۰۰۴). Investigation of genetic variation in Persian sturgeon, ...
  • Avise J.C. (۱۹۹۴) Molecular Markers, Natural History, and Evolution. Chapman ...
  • Billington N. and Hebert D.N. (۱۹۹۱) Mitochondrial DNA diversity in ...
  • Birstein V.J. (۱۹۹۳) Sturgeons and paddlefishes: threatened fishes in need ...
  • Birstein V.I, Bemis W.E, and Waldman J.R. (۱۹۹۷) The threatened ...
  • Brown W.M. (۱۹۸۵). The mitochondrial genome of animals.In: MacIntyre, R.J. ...
  • Brown J.R., Beckenbach A.T. and Smith M.J. (۱۹۹۳) Intraspecific DNA ...
  • Brown K.H. (۲۰۰۸) Fish mitochondrial genomics: sequence, inheritance and functional ...
  • Excoffier L., Smouse P.E., and Quattro J.M. (۱۹۹۲) Analysis of ...
  • Excoffier L., Laval G., and Schneider S. (۲۰۰۵) Arlequin Ver. ...
  • Grunwald C., Stabile, J., Waldman, J.R., Gross, R., Wirgin, I. ...
  • Hillis, D and Moritz, M. C. (۱۹۹۰). Molecular taxonomic. Sinauer ...
  • نمایش کامل مراجع