Phylogeny, genetic diversity and population structure of Brandt s hedgehog Paraechinus hypomelas, inferred from the mitochondrial evidences

Publish Year: 1398
نوع سند: مقاله ژورنالی
زبان: English
View: 411

This Paper With 11 Page And PDF Format Ready To Download

  • Certificate
  • من نویسنده این مقاله هستم

استخراج به نرم افزارهای پژوهشی:

لینک ثابت به این Paper:

شناسه ملی سند علمی:

JR_JWB-3-2_003

تاریخ نمایه سازی: 4 تیر 1398

Abstract:

The Brandt s hedgehog Paraechinus hypomelas (Brandt 1836), is a relatively widespread species which range from Arabian Peninsula and Iran, through southern areas of Central Asia to western South Asia.The phylogenetic position of the species tat is little known in Iran, although it has been studied in different parts of its distributional range. To this aim, during 2017-2018, the species was sampled in a non-invasive method (n= 34) from the southeast of Iran. Genetic variation and polymorphic sites were determined from cytb (1120bp). Totally 22 haplotypes and haplotype diversity ranging from 0.859 to 1.099 were detected from cytb. The average value of the nucleotide differences among the cytb sequences was calculated as 4.68. The Tamija’s  D test (-1.88) and Fu s FS test (-15.73) revealed negative value, indicating significantly deviations from neutrality which both indicate of recent population expansion. Investigation on pairwise differences, mismatch distributions, indicated of past expansions (SSD= 0.0033, P value = 0.38). The Iran south east population constitute a phylogenetic clade which is completely distinct from other known lineages in the species distributional range. Relatively high amount of the haplotype and nucleotide diversity can be related to the high effective population of the species, the rate of gene flow among the populations and also the sudden expansion in the past.

Authors

Ehsan Kashani

Department of Environmental Sciences, Faculty of Natural Resources and Environment Islamic Azad University, Science and Research Branch, Tehran, Iran

HamidReza Rezaei

Department of Environment, Faculty of Fisheries and Environmental Science, Gorgan University of Agricultural Sciences and Natural Resources, Iran

Nematolah Khorasani

Department of Fisheries and Environmental Sciences, University of Tehran, Tehran, Iran,

Morteza Naderi

Department of Environmental Science, Faculty of Agriculture and Natural Resources, Arak University, Arak , Iran

مراجع و منابع این Paper:

لیست زیر مراجع و منابع استفاده شده در این Paper را نمایش می دهد. این مراجع به صورت کاملا ماشینی و بر اساس هوش مصنوعی استخراج شده اند و لذا ممکن است دارای اشکالاتی باشند که به مرور زمان دقت استخراج این محتوا افزایش می یابد. مراجعی که مقالات مربوط به آنها در سیویلیکا نمایه شده و پیدا شده اند، به خود Paper لینک شده اند :
  • Avise J. 2000. Phylogeography: The History and Formation of Species. ...
  • Bannikova A.A., Lebedev V.S., Abramov A.V., Rozhnov, V.V. 2014. Contrasting ...
  • Berggren K. T., Ellegren H., Hewitt G. M., Seddon J. ...
  • Bolfíková B., Hulva P. 2012. Microevolution of sympatry: landscape genetics ...
  • Clement M., Posada D., Crandall K.A. 2000. TCS: a computer ...
  • Darriba D., Taboada G. L., Doallo R., Posada D. 2012. ...
  • Derouiche L., Bouhadad R., Fernandes C. 2016. Mitochondrial DNA and ...
  • DeSalle R., Amato G. 2004. The expansion of conservation genetics. ...
  • Djan M., Stefanović M., Veličković N., Ćosić N., Ćirović D. ...
  • Etemad E. 1985. Mammals of Iran. Tehran, National council of ...
  • Evanno G., Regnaut S., Goudet J. 2005. Detecting the number ...
  • Frankham R., Ballou J. D., Briscoe D. A. 2004. A ...
  • Fu Y.X. 1997. Statistical tests of neutrality of mutations against ...
  • Habib M., Lakra W.S., Mohindra V., Khare P., Barman A.S., ...
  • Harley E. H., Baumgarten I., Cunningham J., O ryan C. ...
  • He K., Chen J.H., Gould G.C., Yamaguchi N., Ai H.S., ...
  • Hewitt G.M. 2000. The genetic legacy of the Quaternary ice ...
  • Huelsenbeck J. P., Ronquist F. 2001. MRBAYES: Bayesian inference of ...
  • Huson D.H., Bryant D. 2006. Application of phylogenetic networks in ...
  • Karami M., Huttere R., Siahsarvie R., Benda P. 2002. Annotated ...
  • Khosravi R., Hemami M.R., Malekian M., Silva T.L., Rezaei H. ...
  • Lerp H., Wronski T., Pfenninger M., Plath M. 2011. A ...
  • Librado P., Rozas J. 2009. DnaSP v5: a software for ...
  • Lynch M., Crease T. 1990. The analysis of population survey ...
  • McVeigh H. P., Davidson W. S. 1991. A salmon id ...
  • Nei M. 1987. Molecular evolutionary genetics: Columbia university press. ...
  • Pablos M. T. P., Saragusty J., Santiago-Moreno J., Stagegaard J., ...
  • Pritchard J.K., Stephens M., Donnelly P. 2000. Inference of population ...
  • Randi E., Lucchini V. 2002. Detecting rare introgression of domestic ...
  • Schneider S., Excoffier L. 1999. Estimation of past demographic parameters ...
  • Seddon J.M., Santucci F., Reeve N.J., Hewitt G.M. 2001. DNA ...
  • Silva T. L., Godinho R., Castro D., Abáigar T., Brito ...
  • Spielman D., Brook B.W., Frankham R. 2004. Most species are ...
  • Stefanović M., Veličković N., Ćosić N., Ćirović D., Đan M. ...
  • Tajima F. 1989. Statistical method for testing the neutral mutation ...
  • Thirstrup J.P., Pertoldi C., Loeschcke V. 2008. Genetic aalysis, breed ...
  • Thompson J.D., Higgins D.G., Gibson T.J. 1994. improving the sensitivity ...
  • نمایش کامل مراجع