سمتهای علمی و اجرایی در دانشگاهها و مراکز علمی کشور
سمتهای علمی و اجرایی در کنفرانس ها و نشستهای معتبر ایران
ISI Papers
- "Computational Identifi cation of MicroRNAs and Their Transcript Target(s) in Field Mustard (Brassica rapa L.)", Armenian Green Publishing Co., (2017), Vol 15, No 1: 22-32
- "A protein fold classifier formed by fusing different modes of pseudo amino acid composition via PSSM", Elsevier BV, (2011), Vol 35, No 1: 1-9
- "Denaturation and intermediates study of two sturgeon hemoglobins by n-dodecyl trimethylammonium bromide", Elsevier BV, (2013), Vol 53, No : 107-113
- "Biochemical Characterization of Hemoglobins from Caspian Sea Sturgeons (Acipenser persicus and Acipenser stellatus)", Springer Science and Business Media LLC, (2011), Vol 62, No 1: 73-81
- "Information theory in systems biology. Part I: Gene regulatory and metabolic networks", Elsevier BV, (2016), Vol 51, No : 3-13
- "Drug–target interaction prediction from PSSM based evolutionary information", Elsevier BV, (2016), Vol 78, No : 42-51
- "Evidence theoretic protein fold classification based on the concept of hyperfold", Elsevier BV, (2012), Vol 240, No 2: 148-160
- "Architecture design of an intelligent information fusion agent for information retrieval from dynamic environments", IEEE, (2007), Vol , No :
- "Micromorphological studies of leaf epidermal features in populations of maples (Acer L.) from Iran", Magnolia Press, (2017), Vol 299, No 1: 36
- "Efficient removal of various textile dyes from wastewater by novel thermo-halotolerant laccase", Elsevier BV, (2021), Vol 337, No : 125468
- "Application of free and immobilized novel bifunctional biocatalyst in biotransformation of recalcitrant lignocellulosic biomass", Elsevier BV, (2021), Vol 285, No : 131412
- "CpACpP: In Silico Cell-Penetrating Anticancer Peptide Prediction Using a Novel Bioinformatics Framework", American Chemical Society (ACS), (2021), Vol 6, No 30: 19846-19859
- "Information theory in systems biology. Part I: Gene regulatory and metabolic networks", Elsevier BV, (2016), Vol 51, No : 3-13
- "Drug–target interaction prediction from PSSM based evolutionary information", Elsevier BV, (2016), Vol 78, No : 42-51
- "From indication to decision: A hierarchical approach to model the chemotactic behavior of Escherichia coli", Elsevier BV, (2020), Vol 495, No : 110253
- "Evidence theoretic protein fold classification based on the concept of hyperfold", Elsevier BV, (2012), Vol 240, No 2: 148-160
- "A protein fold classifier formed by fusing different modes of pseudo amino acid composition via PSSM", Elsevier BV, (2011), Vol 35, No 1: 1-9
- "A Network Model for Vehicular Ad Hoc Networks: An Introduction to Obligatory Attachment Rule", Institute of Electrical and Electronics Engineers (IEEE), (2016), Vol 3, No 2: 82-94
- "A Bioinformatics Study of Complete Amino Acid Sequences’ Changes of Hemagglutinin Antigen of H1N1 Influenza Viruses in GenBank From Year 2006 to 2013 in Iran", Kowsar Medical Institute, (2017), Vol 10, No 8:
- "Denaturation and intermediates study of two sturgeon hemoglobins by n-dodecyl trimethylammonium bromide", Elsevier BV, (2013), Vol 53, No : 107-113
- "A combined Parzen-wavelet approach for detection of vuggy zones in fractured carbonate reservoirs using petrophysical logs", Elsevier BV, (2014), Vol 119, No : 1-7
- "Effects of zinc binding on the structure and thermal stability of camel alpha-lactalbumin", Springer Science and Business Media LLC, (2014), Vol 120, No 1: 481-488
- "Identification and characterization of a novel thermostable xylanase from camel rumen metagenome", Elsevier BV, (2019), Vol 126, No : 1295-1302
- "The role of MicroRNAs in defense against viral phytopathogens", Elsevier BV, (2019), Vol 107, No : 8-13
- "Link between short tandem repeats and translation initiation site selection", Springer Science and Business Media LLC, (2018), Vol 12, No 1:
- "A computational method for prediction of xylanase enzymes activity in strains of Bacillus subtilis based on pseudo amino acid composition features", Public Library of Science (PLoS), (2018), Vol 13, No 10: e0205796
- "The Quest for Missing Proteins in Rice", Elsevier BV, (2019), Vol 12, No 1: 4-6
- "Mining of camel rumen metagenome to identify novel alkali-thermostable xylanase capable of enhancing the recalcitrant lignocellulosic biomass conversion", Elsevier BV, (2019), Vol 281, No : 343-350
- "A novel thermostable cellulase cocktail enhances lignocellulosic bioconversion and biorefining in a broad range of pH", Elsevier BV, (2020), Vol 154, No : 349-360
- "Identification and characterization of a novel thermostable xylanase from camel rumen metagenome", Elsevier BV, (2019), Vol 126, No : 1295-1302
- "Link between short tandem repeats and translation initiation site selection", Springer Science and Business Media LLC, (2018), Vol 12, No 1:
- "Effect of compatible and noncompatible osmolytes on the enzymatic activity and thermal stability of bovine liver catalase", Informa UK Limited, (2013), Vol 31, No 12: 1440-1454
- "FoPA: identifying perturbed signaling pathways in clinical conditions using formal methods", Springer Science and Business Media LLC, (2019), Vol 20, No 1:
- "Identification and Characterization of Novel miRNAs in Chlamydomonas reinhardtii by Computational Methods", Bentham Science Publishers Ltd., (2016), Vol 5, No 1: 66-77
- "In Silico Identification of Conserved MiRNAs from Physcomitrella patens ESTs and their Target Characterization", Bentham Science Publishers Ltd., (2018), Vol 14, No 1: 33-42
- "Genome-wide prediction and prioritization of human aging genes by data fusion: a machine learning approach", Springer Science and Business Media LLC, (2019), Vol 20, No 1:
- "An integrative Bayesian network approach to highlight key drivers in systemic lupus erythematosus", Springer Science and Business Media LLC, (2020), Vol 22, No 1:
- "EARN: an ensemble machine learning algorithm to predict driver genes in metastatic breast cancer", Springer Science and Business Media LLC, (2021), Vol 14, No 1:
- "FoPA: identifying perturbed signaling pathways in clinical conditions using formal methods", Springer Science and Business Media LLC, (2019), Vol 20, No 1:
- "A Novel High Glucose-Tolerant β-Glucosidase: Targeted Computational Approach for Metagenomic Screening", Frontiers Media SA, (2020), Vol 8, No :
- "A Portrait of AKT Kinases: Human Cancer and Animal Models Depict a Family with Strong Individualities", Informa UK Limited, (2004), Vol 3, No 3: 268-275
- "In-silico discovery of bifunctional enzymes with enhanced lignocellulose hydrolysis from microbiota big data", Elsevier BV, (2021), Vol 177, No : 211-220
- "The importance of CDC27 in cancer: molecular pathology and clinical aspects", Springer Science and Business Media LLC, (2021), Vol 21, No 1:
- "A novel metagenome-derived thermostable and poultry feed compatible α-amylase with enhanced biodegradation properties", Elsevier BV, (2020), Vol 164, No : 2124-2133
- "The Stabilizing Mechanism of Immobilized Metagenomic Xylanases on Bio-Based Hydrogels to Improve Utilization Performance: Computational and Functional Perspectives", American Chemical Society (ACS), (2020), Vol 31, No 9: 2158-2171
- "BIPEP: Sequence-based Prediction of Biofilm Inhibitory Peptides Using a Combination of NMR and Physicochemical Descriptors", American Chemical Society (ACS), (2020), Vol 5, No 13: 7290-7297
- "Co-abundance analysis reveals hidden players associated with high methane yield phenotype in sheep rumen microbiome", Springer Science and Business Media LLC, (2020), Vol 10, No 1:
- "Beyond Taxonomic Analysis of Microbiomes: A Functional Approach for Revisiting Microbiome Changes in Colorectal Cancer", Frontiers Media SA, (2020), Vol 10, No :
- "Unraveling the molecular heterogeneity in type 2 diabetes: a potential subtype discovery followed by metabolic modeling", Springer Science and Business Media LLC, (2020), Vol 13, No 1:
- "A novel high performance in-silico screened metagenome-derived alkali-thermostable endo-β-1,4-glucanase for lignocellulosic biomass hydrolysis in the harsh conditions", Springer Science and Business Media LLC, (2020), Vol 20, No 1:
- "A generalized machine‐learning aided method for targeted identification of industrial enzymes from metagenome: A xylanase temperature dependence case study", Wiley, (2020), Vol 118, No 2: 759-769
- "MCIC: Automated Identification of Cellulases From Metagenomic Data and Characterization Based on Temperature and pH Dependence", Frontiers Media SA, (2020), Vol 11, No :
- "CAMAMED: a pipeline for composition-aware mapping-based analysis of metagenomic data", Oxford University Press (OUP), (2021), Vol 3, No 1:
- "Application of a time delay neural network for predicting positive and negative links in social networks", The Scientific and Technological Research Council of Turkey (TUBITAK-ULAKBIM), (2016), Vol 24, No : 2825-2837
- "Biogeography, distribution and conservation status of maples (Acer L.) in Iran", Springer Science and Business Media LLC, (2017), Vol 31, No 5: 1583-1598
- "IAMPE: NMR-Assisted Computational Prediction of Antimicrobial Peptides", American Chemical Society (ACS), (2020), Vol 60, No 10: 4691-4701
Conference Papers
- Comparative Metagenomics of the Prokaryotic Communities of the Persian Gulf ارائه شده در the fourth International and 16th National Genetics Congress (1399)
- Signaling pathway modeling for systematic study of diseases ارائه شده در 21th National & 9th International Congress on Biology (1399)
- A Proposed Ensemble Classifier (EC) Machine Learning Algorithm for Evaluation of Plausible Drivers of Metastatic Breast Cancer ارائه شده در ninth iranian conference on on bioinformatics (1398)
- Compositional bias in metagenomic data analysis ارائه شده در ninth iranian conference on on bioinformatics (1398)
- A Novel Random Forest-Based Model to Predicting Anticancer Peptides ارائه شده در ninth iranian conference on on bioinformatics (1398)
- بررسی عوامل موثر بر بهره وری منابع انسانی با تاکید بر نقش سرمایه فکری و عوامل محیطی- مکانی ارائه شده در The 4th National Conference on New Technologies and Technologies of Iran (1397)
- Step by Step from Machine Learning Algorithm to Making QSAR model: Present a Combined Feature Selection with a Case Study ارائه شده در Iranian Conference on Bioinformatic (1396)
- Feature Selection in Quantitative Structure-Activity Relationship (QSAR) Study: Combining Firefly and Neural Network methods ارائه شده در Iranian Conference on Bioinformatic (1396)
- Pharmacogenomic management of malignancies using Integrated Clinical Genomics (ICG) ارائه شده در 2nd International Personalized Medical Congress (1396)
- تعریف نشانگرهای پایا برای بیماری های پیچیده با استفاده از شبکه های برهمکنش پروتئین ارائه شده در The Eighth International Conference on Information and Knowledge Technology (1395)
- A hypothetical evolutionary relationship between the phylogeny position and the hydrophobic properties of fish s hemoglobin ارائه شده در 14th Conference on Biophysical Chemistry (1395)
- تکثیر آمپلیکونهای ژن آلفا گلوبین در دو گونه از ماهیان خاویاری دریای خزر و استخراج توالی ژن و پروتئین آنها ارائه شده در 12th Congress of Iranian Genetics Society (1393)
- استخراج مدل رفتاری موتورهای جستجوی مورد استفاده در یک فراجویشگر هوشمند ارائه شده در 01st International Conference on Information and Knowledge Technology (1382)
- طراحی معماری یک عامل هوشمند مبتنی برنظریه ترکیب داده ها جهت استخراج اطلاعات از محیطهای پویا ارائه شده در 11th Iranian Conference on Electric Engineering (1382)
- Comprehensive analysis of GUCA۲A as aprognostic and diagnostic marker in colorectal cancer ارائه شده در اولین کنگره بین المللی ژنومیک سرطان (1402)
- Unraveling the Complexity of rhizosphere microbiome affecting the quality of Crocus sativus ارائه شده در یازدهمین همایش ملی و دومین همایش بین المللی بیوانفورماتیک ایران (1401)
- Cell Spatial Distribution Patterns of Human Distal Lung ارائه شده در یازدهمین همایش ملی و دومین همایش بین المللی بیوانفورماتیک ایران (1401)
- Learning state machines on protein sequences ارائه شده در یازدهمین همایش ملی و دومین همایش بین المللی بیوانفورماتیک ایران (1401)
- A comparative structural study on two immobilized metagenomic α-amylases by molecular docking ارائه شده در یازدهمین همایش ملی و دومین همایش بین المللی بیوانفورماتیک ایران (1401)
- A Transformer based mutation prediction algorithm ارائه شده در یازدهمین همایش ملی و دومین همایش بین المللی بیوانفورماتیک ایران (1401)
- A Plastic-Contaminated Soil Gene Catalog Constructed byMetagenomic Approaches ارائه شده در یازدهمین همایش ملی و دومین همایش بین المللی بیوانفورماتیک ایران (1401)
- Feature set prioritization of metagenomes for predicting colorectalcancer based on multiple human gut microbiome datasets ارائه شده در یازدهمین همایش ملی و دومین همایش بین المللی بیوانفورماتیک ایران (1401)
- The Role of Tumor Microenvironment Communication in Cancer Progression Using Single-Cell RNA Sequencing: A System Level Study ارائه شده در اولین همایش بین المللی و دهمین همایش ملی بیوانفورماتیک ایران (1400)
- Analysis of floral development related gene co-expression networks in Arabidopsis thaliana ارائه شده در اولین همایش بین المللی و دهمین همایش ملی بیوانفورماتیک ایران (1400)
- Drug-Target Interaction Prediction with Deep Learning and Recommender Systems ارائه شده در اولین همایش بین المللی و دهمین همایش ملی بیوانفورماتیک ایران (1400)
- Agonist/ antagonist compounds’ mechanism of action on estrogen receptor-positive breast cancer: a system-level investigation assisted by meta-analysis ارائه شده در اولین همایش بین المللی و دهمین همایش ملی بیوانفورماتیک ایران (1400)
- Tandem repeats ubiquitously flank and contribute to translation initiation sites ارائه شده در اولین همایش بین المللی و دهمین همایش ملی بیوانفورماتیک ایران (1400)
- Distribution of HLA alleles in malignant tissues of patients with hepatocellular carcinoma ارائه شده در اولین همایش بین المللی و دهمین همایش ملی بیوانفورماتیک ایران (1400)
- Machine learning-driven set of peripheral blood microRNAs as diagnostic biomarkers for myocardial infarction ارائه شده در اولین همایش بین المللی و دهمین همایش ملی بیوانفورماتیک ایران (1400)
- Prediction of immunogenic peptides derived from FVIII by machine learning approach ارائه شده در اولین همایش بین المللی و دهمین همایش ملی بیوانفورماتیک ایران (1400)
- Simultaneous inference of cell-line-specific gene regulatory networks and mode-of-action of drugs from drug-induced gene expression measurements ارائه شده در اولین همایش بین المللی و دهمین همایش ملی بیوانفورماتیک ایران (1400)
- Exploration of Plastic Contaminated Soil Metagenome to Identify Novel Plastic Degradation Enzymes ارائه شده در اولین همایش بین المللی و دهمین همایش ملی بیوانفورماتیک ایران (1400)
- RNA-sequencing of CD۴+ T cells in Relapsing-Remitting Multiple Sclerosis patients at relapse; deciphering the involvement of novel genes and pathways ارائه شده در اولین همایش بین المللی و دهمین همایش ملی بیوانفورماتیک ایران (1400)
Journal Papers
- Identification of Common Hub Genes and Key Molecular Pathways between Multiple Sclerosis and Urological Disorders منتشر شده در فصلنامه تحقیقات بین رشته ای در اورولوژی (1403)
- NGS در خدمت ارتقای پزشکی شخص محور: گزارش موردی یک بیمار مبتلا به سرطان پستان تهاجمی منتشر شده در مجله زیست شناسی جانوری تجربی (1400)