Plant Epigenetics: Mechanisms and Applications

Publish Year: 1398
نوع سند: مقاله ژورنالی
زبان: English
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JR_JEPUSB-1-1_005

تاریخ نمایه سازی: 12 تیر 1401

Abstract:

Plant epigenetic has become one of the key research topics not only as the subject of basic research, but also as a new source of useful traits for plant breeding. Epigenetic regulation is necessary for the production of differentiated cells throughout plant development, as well as maintaining the stability and integrity of the gene expression profiles. Although epigenetic processes are essential for natural growth, they can become misdirected led to abnormal phenotypes and diseases. Epigenetics is the study of heritable phenotype changes that do not involve alterations in the DNA sequence. The microstructure (not code) of DNA itself or the associated chromatin proteins may be modified, causing activation or silencing. This mechanism enables differentiated cells in a multicellular organism to express only the genes which are necessary for their own activity. In this review, our goal is to introduce epigenetics and its different applications in plants, especially in production of transgenic plants, plants tolerate to biotic and abiotic stresses and understanding the mechanisms of gene silencing. Also, in this review, we have referred to the role of transposons in epigenetic, epigenetic engineering methods, epigenetic fingerprinting and ultimately methods for epigenetic data analysis and related databases.

Authors

Rahele Ghanbari Moheb Seraj

PhD Student in Biotechnology and Molecular Genetics of Horticulture Plants, Agriculture Sciences and Natural Resources Faculty, Mohaghegh Aradabili University, Ardabil, Iran

Masoud Tohidfar

Associate Professor, Biotechnology Department, Faculty of Life Science and Biotechnology, Shahid Beheshti University, Iran.

Hossein Piri

Assistant Professor, Agriculture Department, Engineering and Technical Faculty, Velayat University, Iranshahr, Iran.

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  • Abobatta, W. F. (۲۰۱۸). Epigenetics in the Agricultural Sector. Annals ...
  • Aceituno, F. F., Nick, M., Seung, Y. R., & Rodrigo, ...
  • Al-Lawati, A. Al-Bahry, S., Victor, R., Al-Lawati, AH., Yaish, MW. ...
  • Allis, C. D., Caparros, M.L., Jenuwein, T. & Reinberg, D. ...
  • Alonso, C., Perez, R., Bazaga, P., Medrano, M., & Herrera, ...
  • Álvarez-Venegas, R., & De-la-Peña, C. (۲۰۱۶) Editorial: Recent Advances of ...
  • Angarica, V.E., & Del Sol, A. (۲۰۱۷). Bioinformatics Tools for ...
  • Barraza-Villarreal, A., Sunyer, J., Hernandez-Cadena, L., Escamilla-Nuñez, M.C., Sienra-Monge, J.J., ...
  • Barski, A., Cuddapah, S., Cui, K., Roh, TY., Schones, DE., ...
  • Bartke, T., Borgel, J., & DiMaggio, PA. (۲۰۱۳). Proteomics in ...
  • Bernstein, B. E., Stamatoyannopoulos, J. A., Costello, J. F., Ren, ...
  • Bibikova, M., Barnes, B., Tsan, C., Ho, V., Klotzle, B., ...
  • Bocchini, M., Bartucca, M. L., Ciancaleoni, S., Mimmo, T., Cesco, ...
  • Booth, MJ., Branco, M. R., Ficz, G., Oxley, D., Krueger, ...
  • Boyko, A., & Kovalchuk, I. (۲۰۱۱). Genetic and epigenetic effects ...
  • Brautigam, K., Vining, K. J., Lafon-Placette, C., Fossdal, C. G., ...
  • Buenrostro, J. D., Giresi, P. G., Zaba, L. C., Chang, ...
  • Cech, T. R. & Steitz, J. A. (۲۰۱۴). The noncoding ...
  • Consortium, E. P. (۲۰۱۲). An integrated encyclopedia of DNA elements ...
  • Cortijo, S., Wardenaar, R., Colomé-Tatché, M., Gilly, A., Etcheverry, M., ...
  • Dai, L. F., Chen, Y. L., Luo, X. D., Wen, ...
  • Day, J. J. (۲۰۱۴). New approaches to manipulating the epigenome. ...
  • De-la-Pena, C., Nic-Can, G., Ojeda, G., Herrera-Herrera, J., Lopez-Torres, A., ...
  • De-La-Peña, C., Rangel-Cano, A., & Alvarez-Venegas, R. (۲۰۱۲). Regulation of ...
  • Ding, B., & Wang, G. L. (۲۰۱۵). Chromatin versus pathogens: ...
  • Doerfler, W. (۱۹۹۵). Uptake of foreign DNA by mammalian cells ...
  • Doolittle, W. F., & Sapienza, C. (۱۹۸۰). Selfish genes, the ...
  • Dowen, R. H.,, Pelizzola, M., Schmitz, R. J., Lister, R., ...
  • Down, T. A., Rakyan, V. K., Turner, D. J., Flicek, ...
  • English, J. J., Mueller, E., & Baulcombe, D. C. (۱۹۹۶). ...
  • Fedoroff, N.V. (۲۰۱۲). Transposable Elements, Epigenetics, and Genome Evolution. SCIENCE, ...
  • Fortes, A., & Gallusci, P. (۲۰۱۷). Plant stress responses and ...
  • Fujimoto, R., Sasaki, T., Ishikawa, R., Osabe, K., Kawanabe, T. ...
  • Furey, TS. (۲۰۱۲). ChIP-seq and beyond: new and improved methodologies ...
  • Galindo Gonzalez, Leonardo & Sarmiento, Felipe & Quimbaya, Mauricio. (۲۰۱۸). ...
  • Girard, L., & Freeling, M. (۱۹۹۹). Regulatory changes as a ...
  • Giresi, P. G., Kim, J., McDaniell, R. M., Iyer, & ...
  • González, R. M. Ricardi, M. M., & Iusem, N. D. ...
  • Gourcilleau, D., Bogeat-Triboulot, M. B., Le Thiec, D., Lafon-Placette, C., ...
  • Gregory, D. J., Mikhaylova, L., & Fedulov, A. V. (۲۰۱۲). ...
  • Gutierrez-Marcos, J. F., & Dickinson, H. G. (۲۰۱۲). Epigenetic reprogramming ...
  • Hauben, M., Haesendonckx, B., Standaert, E., Van Der Kelen, K., ...
  • Henry, R. J. (۱۹۹۸). Molecular and biochemical characterization of somaclonal ...
  • Hickey, D. A. (۱۹۸۲). Selfish DNA: a sexually-transmitted nuclear parasite. ...
  • Hirsch, S., Baumberger, R., & Grossniklaus, U. (۲۰۱۳). Epigenetic variation, ...
  • Holoch, D. & Moazed, D. (۲۰۱۵). RNA-mediated epigenetic regulation of ...
  • Jiang, N., Bao, Z., Zhang, X. Eddy, SR., & Wessler, ...
  • Jordan, I. K., Rogozin, I. B., Glazko, G. V., & ...
  • Jurkowska RZ, Jeltsch A (۲۰۱۰) Silencing of gene expression by ...
  • Jurkowski, T.P., Ravichandran, M., & Stepper, P. (۲۰۱۵). Synthetic epigenetics—towards ...
  • Kertbundit, S., Degreve, H., Deboeck, F., Van Montagu, M., & ...
  • Kitimu, SR., Taylor, J., March, TJ., Tairo, F., Wilkinson, MJ. ...
  • Konermann, S., Brigham, MD., Trevino, AE., Hsu, P.D., Heidenreich, M., ...
  • Laayoun, A., & Smith, SS. (۱۹۹۵). Methylation of slipped duplexes, ...
  • Li, X., Zhu, J., Hu, F., Ge, S., Ye, M., ...
  • Lim, DHK., & Maher, ER. (۲۰۱۰). DNA methylation: a form ...
  • Lisch, D. (۲۰۰۹). Epigenetic Regulation of Transposable Elements in Plants. ...
  • Lister, R., Pelizzola, M., Dowen, RH., Hawkins, R. D., Hon, ...
  • Liu, J., Feng, L., Li, J., & He, Z. (۲۰۱۵). ...
  • Loza-Muller, L., Rodríguez-Corona, U., Sobol, M., Rodríguez-Zapata, L.C., Hozak, P. ...
  • Lu, X., Wang, W., Ren, W., Chai, Z., Guo, W., ...
  • Madlung, A., & Comai, L. (۲۰۰۴). The effect of stress ...
  • Maeder, ML., Angstman, JF., Richardson, ME., Linder, SJ., Cascio, VM., ...
  • Magnani, L. (۲۰۱۴). Epigenetic engineering and the art of epigenetic ...
  • Matthes, M., Singh, R., Cheah, S. C., & Karp, A. ...
  • Matzke, AJM., Neuhuber, F., Park, YD., Ambros, PF., & Matzke, ...
  • Mendenhall, EM., Williamson, KE., Reyon, D., Zou, JY., Ram, O., ...
  • Migicovsky, Z., Yao, Y., & Kovalchuk, I. (۲۰۱۴). Transgenerational phenotypic ...
  • Mirouze, M., & Paszkowski, J. (۲۰۱۱). Epigenetic contribution to stress ...
  • Munshi, A., Ahuja, Y.R. & Bahadur, B. (۲۰۱۵). Epigenetic Mechanisms ...
  • Otto, C., Stadler, PF., & Hoffmann, S. (۲۰۱۲). Fast and ...
  • Park, Y-D., Papp, I., Moscone, EA., Iglesias, VA., Vaucheret, H., ...
  • Paul, B., Barnes, S., Demark-Wahnefried, W., Morrow, C., Salvador, C., ...
  • Pikaard, C., & Mittelsten Scheid, O. (۲۰۱۴). Epigenetic regulation in ...
  • Posner, J.L., Baldock, J.O., & Hedtcke, J. L. (۲۰۰۸). Organic ...
  • Prols, F., & Meyer, P. (۱۹۹۲). The methylation patterns of ...
  • Ragupathy, R., Ravichandran, S., Mahdi, SR., Huang, D., Reimer, E., ...
  • Reid, L.M., O’Donell, C.P., & Downell, G. (۲۰۰۶). Recent technological ...
  • Reinhart, B. J., & Bartel, D. P., (۲۰۰۲). Small RNAs ...
  • Rivenbark, A. G., Stolzenburg, S., Beltran, A. S., Yuan, X., ...
  • Rodríguez López, C.M., & Wilkinson, M.J. (۲۰۱۵). Epi-fingerprinting and epi-interventions ...
  • Saraswat, S., Kumar Yadav, A., Sirohi, P. & Singh, N.K. ...
  • Schmitt, F., Oakeley, E. J., & Jost, J. P. (۱۹۹۷). ...
  • Schmitz, R.J., He, Y., Valdés-López, O., Khan, S.M., Joshi, T., ...
  • Sha, A.H., Lin, X.H., Huang, J.B., & Zhang, D.P. (۲۰۰۵). ...
  • Shrestha, A., Khan, A. & Dey, N. (۲۰۱۸). Cis-Trans Engineering: ...
  • Slotkin, R.K., & Martienssen, R. (۲۰۰۷). Transposable elements and the ...
  • Smith, AD., Chung, WY., Hodges, E., Kendall, J., Hannon, G., ...
  • Song, L., & Crawford, GE., (۲۰۱۰). DNase-seq: a high-resolution technique ...
  • Song, Q., Zhang, T., Stelly, DM. & Chen, ZJ. (۲۰۱۷). ...
  • Song, Q., Decato, B., Hong, E. E., Zhou, M., Fang, ...
  • Springer, N. M. (۲۰۱۳). Epigenetics and crop improvement. Trends in ...
  • Srancikova, A., Horvathova, E., & Kozics, K. (۲۰۱۳). Biological effects ...
  • Stam, M., Mol, J.N.M. & Kooter, J.M. (۱۹۹۷). Review Article: ...
  • Su, L.C., Liu, X., Chen, Y.P., & Li, L. (۲۰۱۲). ...
  • Szyf, M. (۲۰۰۹). Epigenetics, DNA methylation, and chromatin modifying drugs. ...
  • Temel, A., Janack, B. & Humbeck, K. (۲۰۱۵). Epigenetic Regulation ...
  • Thakore, PI., D’Ippolito, AM., Song, L., Safi, A., Shivakumar, NK., ...
  • Tricker, P., Rodríguez López, C. M., Hadley, P., Wagstaff, C., ...
  • Tricker, P. J., Lo´pez, C. M. R., Gibbings, G., Hadley, ...
  • Us-Camas, R., Rivera-Solı´s, G., Duarte-Ake, F. & De-la-Pena, C. (۲۰۱۴). ...
  • Vanstraelen, M., & Benková, E. (۲۰۱۲). Hormonal interactions in the ...
  • Vaucheret, H. (۱۹۹۳). Identifcation of a general silencer for ۱۹S ...
  • Wang, Q., & Dooner, H. K. (۲۰۰۶). Eukaryotic transposable elements ...
  • Wibowo, A., Becker, C., Marconi, G., Durr, J., Price, J., ...
  • Wollmann, H., & Berger, F., (۲۰۱۲). Epigenetic reprogramming during pant ...
  • Wu, TD., & Nacu, S. (۲۰۱۰). Fast and SNP-tolerant detection ...
  • Xi, Y., Bock, C., Muller, F., Sun, D., Meissner, A., ...
  • Yakovlev, I. A., Asante, D. K. A., Fossdal, C. G., ...
  • Yong-Villalobos, L. (۲۰۱۵) Methylome analysis reveals an important role for ...
  • Zhang, L., Cheng, Z., Qin, R., Qiu, Y., Wang, J.L., ...
  • Zhou, DX. (۲۰۰۹) Regulatory mechanism of histone epigenetic modifications in ...
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