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Identification and Discovery of Novel microRNAs in the Human Genome

Publish Year: 1394
Type: Journal paper
Language: English
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JR_PRJMS-18-1_001

Index date: 18 March 2025

Identification and Discovery of Novel microRNAs in the Human Genome abstract

Although more than 98% of the human genome is transcribed, most of these transcripts are not translated into proteins. Rather, they are considered as non-coding RNAs. MicroRNAs (miRNAs) are very short non-coding RNAs approximately 22 nucleotides in length which regulate many key processes of cells such as growth, proliferation, differentiation, cell cycle, apoptosis (programmed cell death) and metabolism. On the other hand, it is known that these small regulatory molecules are involved in many human diseases such as different cancers and cardiovascular disorders. Therefore, discovery and functional characterization of novel miRNAs is a prominent achievement. Low abundance and spatiotemporal expression of these mediator molecules make their discovery difficult by conventional methods. Therefore, bioinformatics software have been designed for the prediction of stem-loop structures capable of producing miRNA precursors in the human genome. On the other hand, there are several bioinformatics tools for prediction of miRNA target genes. Prediction of miRNA target genes helps to characterize the function of a miRNA. In this paper, we have reviewed some of the common efficient bioinformatics tools and experimental approaches used for prediction and identification of the miRNA genes and their target genes.

Identification and Discovery of Novel microRNAs in the Human Genome Keywords:

Identification and Discovery of Novel microRNAs in the Human Genome authors

سادات دوکانه ای فرد

Department of Molecular Genetics, Faculty of Biological Science, Tarbiat Modares University, Tehran, Iran

بهرام محمد سلطانی

Department of Molecular Genetics, Faculty of Biological Science, Tarbiat Modares University, Tehran, Iran

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ENCODE Project Consortium, Birney E, Stamatoyannopoulos JA, Dutta A, Guigó ...
Washietl S, Pedersen JS, Korbel JO, Stocsits C, Gruber AR, ...
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Carthew RW, Sontheimer EJ. Origins and Mechanisms of miRNAs and ...
Cullen BR. Transcription and processing of human microRNA precursors. Mol ...
Ekhteraei-Tousi S, Mohammad-Soltani B, Sadeghizadeh M, Mowla SJ, Parsi S, ...
Azimzadeh Jamalkandi S, Masoudi-Nejad A. RNAi pathway integration in Caenorhabditis ...
Lee RC, Feinbaum RL, Ambros V. The C. The C. ...
van Rooij E, Sutherland LB, Liu N, Williams AH, McAnally ...
Slack FJ, Basson M, Liu Z, Ambros V, Horvitz HR, ...
Vella MC, Slack FJ. C. elegans microRNAs. WormBook, ed. The ...
Pasquinelli AE, Reinhart BJ, Slack F, Martindale MQ, Kuroda MI, ...
Zamore PD, Tuschl T, Sharp PA, Bartel DP. RNAi: double-stranded ...
Grishok A, Pasquinelli AE, Conte D, Li N, Parrish S, ...
Lund E, Güttinger S, Calado A, Dahlberg JE, Kutay U. ...
Ekhteraei Tousi S, Mohammad Soltani B, Sadeghizadeh M, Hoseini S, ...
Guo H, Ingolia NT, Weissman JS, Bartel DP. Mammalian microRNAs ...
Thomson DW, Bracken CP, Goodall GJ. Experimental strategies for microRNA ...
Fabian MR, Sonenberg N, Filipowicz W. Regulation of mRNA translation ...
Lu M, Zhang Q, Deng M, Miao J, Guo Y, ...
Creighton CJ, Reid JG, Gunaratne PH. Expression profiling of microRNAs ...
Dokanehiifard S, Soltani BM, Parsi S, Hosseini F, Javan M, ...
Lu C, Meyers BC, Green PJ. Construction of small RNA ...
Eiring AM, Harb JG, Neviani P, Garton C, Oaks JJ, ...
Takamizawa J, Konishi H, Yanagisawa K, Tomida S, Osada H, ...
Ghanbari R, Mosakhani N, Asadi J, Nouraee N, Mowla SJ, ...
Johnson SM, Grosshans H, Shingara J, Byrom M, Jarvis R, ...
Khalili M, Sadeghizadeh M, Ghorbanian K, Malekzadeh R, Vasei M, ...
He L, Thomson JM, Hemann MT, Hernando-Monge E, Mu D, ...
Almeida MI, Reis RM, Calin GA. MicroRNA history: discovery, recent ...
O'Donnell KA, Wentzel EA, Zeller KI, Dang CV, Mendell JT. ...
Ma R, Jiang T, Kang X. Circulating microRNAs in cancer: ...
Turchinovich A, Samatov TR, Tonevitsky AG, Burwinkel B. Circulating miRNAs: ...
Turchinovich A, Weiz L, Burwinkel B. Extracellular miRNAs: the mystery ...
Liu X, Fortin K, Mourelatos Z. MicroRNAs: biogenesis and molecular ...
Olena AF, Patton JG. Genomic organization of microRNAs. J Cell ...
Okamura K, Hagen JW, Duan H, Tyler DM, Lai EC. ...
Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, ...
Jiang P, Wu H, Wang W, Ma W, Sun X, ...
Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, ...
Berezikov E, Cuppen E, Plasterk RH. Approaches to microRNA discovery. ...
Mendes ND, Freitas AT, Sagot MF. Current tools for the ...
Parsi S, Soltani BM, Hosseini E, Tousi SE, Mowla SJ. ...
Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T. Identification of ...
Seitz H, Royo H, Bortolin ML, Lin SP, Ferguson-Smith AC, ...
Nelson PT, Baldwin DA, Scearce LM, Oberholtzer JC, Tobias JW, ...
Brennecke J, Stark A, Russell RB, Cohen SM. Principles of ...
Kuhn DE, Martin MM, Feldman DS, Terry Jr AV, Nuovo ...
Khan AA, Betel D, Miller ML, Sander C, Leslie CS, ...
Le Brigand K, Robbe-Sermesant K, Mari B, Barbry P. MiRonTop: ...
Hafner M, Landthaler M, Burger L, Khorshid M, Hausser J, ...
Oulas A, Boutla A, Gkirtzou K, Reczko M, Kalantidis K, ...
۵۴-. Lim LP, Glasner ME, Yekta S, Burge CB, Bartel ...
Lai EC, Tomancak P, Williams RW, Rubin GM. Computational identification ...
Jones-Rhoades MW, Bartel DP. Computational identification of plant microRNAs and ...
Bonnet E, Wuyts J, Rouzé P, Van de Peer Y. ...
Bentwich I. Prediction and validation of microRNAs and their targets. ...
Sadeghi B, Ahmadi H, Azimzadeh-Jamalkandi S, Nassiri MR, Masoudi-Nejad A. ...
Ritchie W, Théodule FX, Gautheret D. Mireval: a web tool ...
Helvik SA, Snøve O Jr, Saetrom P. Reliable prediction of ...
Tyagi S, Vaz C, Gupta V, Bhatia R, Maheshwari S, ...
Lewis BP, Burge CB, Bartel DP. Conserved seed pairing, often ...
Ahmadi H, Ahmadi A, Azimzadeh-Jamalkandi S, Shoorehdeli MA, Salehzadeh-Yazdi A, ...
Cai X, Hagedorn CH, Cullen BR. Human microRNAs are processed ...
Grimson A, Farh KK, Johnston WK, Garrett-Engele P, Lim LP, ...
Mazière P, Enright AJ. Prediction of microRNA targets. Drug Discov ...
Enright AJ, John B, Gaul U, Tuschl T, Sander C, ...
Dweep H, Sticht C, Pandey P, Gretz N. miRWalkdatabase: prediction ...
Thirion M, Ochiya T. Roles of microRNAs in the hepatitis ...
Raymond CK, Roberts BS, Garrett-Engele P, Lim LP, Johnson JM. ...
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