Strategies and Clinical Applications of Next Generation Sequencing

Publish Year: 1397
نوع سند: مقاله ژورنالی
زبان: English
View: 190

This Paper With 11 Page And PDF Format Ready To Download

  • Certificate
  • من نویسنده این مقاله هستم

استخراج به نرم افزارهای پژوهشی:

لینک ثابت به این Paper:

شناسه ملی سند علمی:

JR_MCIJO-2-4_001

تاریخ نمایه سازی: 28 بهمن 1399

Abstract:

Abstract DNA sequencing is one of the great valuable techniques in molecular biology, which can be used to detect the sequence of nucleotides in a DNA fragment. The high-throughput se­quencing known as Next Generation Sequencing (NGS) revolutionized genomic research and molecular biology; therefore, the whole human genome can be sequenced with a low cost in several days. NGS technology is similar to the traditional method, Sanger, which detects small DNA fragments by emitted signals at the time of synthesis of each fragment (from the DNA template), but the difference is that NGS can determine the massive simul­taneous sequencing in a few days with high accuracy and the results are directly detected without the need for electrophoresis. In fact, NGS technology combines a variety of steps such as sample preparation, fragmentation of the sample of the studied genome, attachment of adapter to the ends of the fragments, imaging, and data analyses. In recent years, NGS technology continuously expanded the range of applications in different fields by reducing costs, increasing rates, and improving the quality of the data. The current review provid­ed the potential applications of the NGS technology by emphasizing the diagnosis of the genetic diseases, identification of several types of cancers, prenatal screening, epigenetic modifications, personalized medicine, and identification of pathogens.

Authors

Shohreh Khorshidi

Ph.D of molecular genetics, Tarbiat Modares University

Alireza Palangi

Ph.D of clinical biochemistry, Tarbiat Modares University

مراجع و منابع این Paper:

لیست زیر مراجع و منابع استفاده شده در این Paper را نمایش می دهد. این مراجع به صورت کاملا ماشینی و بر اساس هوش مصنوعی استخراج شده اند و لذا ممکن است دارای اشکالاتی باشند که به مرور زمان دقت استخراج این محتوا افزایش می یابد. مراجعی که مقالات مربوط به آنها در سیویلیکا نمایه شده و پیدا شده اند، به خود Paper لینک شده اند :
  • 1. Dovichi NJ. DNA sequencing by capillary electrophoresis. Electrophoresis. 1997;18(12-13):2393-9. DOI: ...
  • 2. Maxam AM, Gilbert W. A new method for sequencing DNA. ...
  • 3. Sanger F, Nicklen S, Coulson AR. DNA sequencing with chain-terminating ...
  • 4. Kim KM, Park JH, Bhattacharya D, Yoon HS. Applications of ...
  • 5. Biesecker LG, Burke W, Kohane I, Plon SE, Zimmern R. ...
  • Rev Genet. 2012;13(11):818-24. DOI: 10.1038/nrg3357 PMID: 23076269 ...
  • 6. Chan EY. Advances in sequencing technology. Mu- tat Res. 2005;573(1-2):13-40. ...
  • 7. Shendure J, Ji H. Next-generation DNA sequencing. Nat Biotechnol. 2008;26(10):1135-45. ...
  • 8. Kamps R, Brandao RD, Bosch BJ, Paulussen AD, Xan- thoulea ...
  • 9. Morozova O, Marra MA. Applications of next-generation sequencing technologies in ...
  • 10. Cottrell CE, Al-Kateb H, Bredemeyer AJ, Duncavage EJ, Spencer DH, ...
  • 11. Matthijs G, Souche E, Alders M, Corveleyn A, Eck S, ...
  • 12. Rehm HL, Bale SJ, Bayrak-Toydemir P, Berg JS, Brown KK, ...
  • 13. Mardis ER. The impact of next-generation sequencing technology on genetics. ...
  • 14. Mardis ER. Next-generation DNA sequencing meth‌ods. Annu Rev Genomics Hum ...
  • 15. Head SR, Komori HK, LaMere SA, Whisenant T, Van Nieuwerburgh ...
  • 16. Dabney J, Meyer M. Length and GC-biases during se-quencing library ...
  • 17. Gilissen C, Hoischen A, Brunner HG, Veltman JA. Dis‌ease gene ...
  • 18. Buermans HP, den Dunnen JT. Next generation sequenc‌ing technology: Advances ...
  • 19. Patel RK, Jain M. NGS QC Toolkit: a toolkit for ...
  • 2012;7(2):e30619. DOI: 10.1371/iournaLpone.0030619 PMID: 22312429 ...
  • 20. Pandey RV, Pabinger S, Kriegner A, Weinhausel A. Clin- QC: ...
  • 21. Rehm HL, Bale SJ, Bayrak-Toydemir P, Berg JS, Brown KK, ...
  • 22. Ellard S, Charlton R, Lindsay H, Camm N, Watson C, ...
  • 23. Trivedi UH, Cezard T, Bridgett S, Montazam A, Nich‌ols J, ...
  • 24. Keegan KP, Trimble WL, Wilkening J, Wilke A, Harri‌son T, ...
  • 25. Schroder J, Bailey J, Conway T, Zobel J. Reference-free validation ...
  • 26. Hert DG, Fredlake CP, Barron AE. Advantages and limita-tions of ...
  • 27. Green RE, Krause J, Ptak SE, Briggs AW, Ronan MT, ...
  • 28. Hall N. Advanced sequencing technologies and their wider impact in ...
  • 29. Simon R, Roychowdhury S. Implementing personalized cancer genomics in clinical ...
  • 30. Jamuar SS, Tan EC. Clinical application of next-genera‌tion sequencing for ...
  • 31. Rehm HL. Disease-targeted sequencing: a cornerstone in the clinic. Nat ...
  • 32. Mardis ER. A decade's perspective on DNA sequenc‌ing technology. Nature. ...
  • 33. Wang Z, Gerstein M, Snyder M. RNA-Seq: a revolutionary tool ...
  • DOI: 10.1038/nrg2484 PMID: 19015660 ...
  • 34. Xuan J, Yu Y, Qing T, Guo L, Shi L. ...
  • 35. Behjati S, Tarpey PS. What is next generation sequencing? Arch ...
  • 36. Seifi M, Ghasemi A, Raeisi S, Heidarzadeh S. Applica‌tion of ...
  • 37. Meyerson M, Gabriel S, Getz G. Advances in understand‌ing cancer ...
  • 38. Meldrum C, Doyle MA, Tothill RW. Next-generation se-quencing for cancer ...
  • 39. Shyr D, Liu Q. Next generation sequencing in cancer research ...
  • 40. Cancer Genome Atlas Network. Comprehensive mo‌lecular portraits of human breast ...
  • 41. Cancer Genome Atlas Network. Comprehensive molecular characterization of human colon ...
  • 42. Cancer Genome Atlas Research Network. Integrat‌ed genomic analyses of ovarian ...
  • 43. Cancer Genome Atlas Research N. Comprehensive ge- nomic characterization of ...
  • 44. Welch JS, Westervelt P, Ding L, Larson DE, Klco JM, ...
  • 45. Russnes HG, Navin N, Hicks J, Borresen-Dale A-L. Insight into ...
  • 46. Samuel N, Hudson TJ. Translating genomics to the clin‌ic: implications ...
  • 47. Cummings CA, Peters E, Lacroix L, Andre F, Lack- ner ...
  • 48. Nakagawa H, Wardell CP, Furuta M, Taniguchi H, Fu- ...
  • jimoto A. Cancer whole-genome sequencing: present and future. Oncogene. 2015;34(49):5943-50. ...
  • 49. Ma R, Gong J, Jiang X. Novel applications of next-gen-eration ...
  • 50. Banerji S, Cibulskis K, Rangel-Escareno C, Brown KK, Carter SL, ...
  • 51. D'Argenio V, Frisso G, Precone V, Boccia A, Fienga A, ...
  • 52. Ma J, Yang J, Jian W, Wang X, Xiao D, ...
  • 53. Farazi TA, Horlings HM, Ten Hoeve JJ, Mihailovic A, Halfwerk ...
  • 54. Li S, Yang C, Zhai L, Zhang W, Yu J, ...
  • 55. Kiiski JI, Pelttari LM, Khan S, Freysteinsdottir ES, Rey- nisdottir ...
  • 56. Thompson ER, Doyle MA, Ryland GL, Rowley SM, Choong DYH, ...
  • 57. Pronina IV, Loginov VI, Burdennyy AM, Fridman MV, Senchenko VN, ...
  • 58. Price KS, Svenson A, King E, Ready K, Lazarin GA. ...
  • 59. Kapoor NS, Curcio LD, Blakemore CA, Bremner AK, Mc- Farland ...
  • s10434-015-4754-2 PMID: 26219241 ...
  • 60. Melchor L, Benitez J. The complex genetic landscape of familial ...
  • 61. Bellcross CA, Kolor K, Goddard KAB, Coates RJ, Reyes M, ...
  • 62. Jalkh N, Chouery E, Haidar Z, Khater C, Atallah D, ...
  • 63. Walsh T, Lee MK, Casadei S, Thornton AM, Stray SM, ...
  • 64. Guan YF, Li GR, Wang RJ, Yi YT, Yang L, ...
  • 65. Goldberg AD, Allis CD, Bernstein E. Epigenetics: a landscape takes ...
  • 66. Callinan PA, Feinberg AP The emerging science of epigenomics. Hum ...
  • 67. Esteller M. The necessity of a human epigenome project. Carcinogenesis. ...
  • 68. Jones PA, Baylin SB. The epigenomics of cancer. Cell. 2007;128(4):683-92. ...
  • 69. Feinberg AP, Tycko B. The history of cancer epigenetics. Nature ...
  • 70. Soto J, Rodriguez-Antolin C, Vallespin E, de Castro Carpeno J, ...
  • 71. Laird PW. The power and the promise of DNA methylation ...
  • 72. Mulero-Navarro S, Esteller M. Epigenetic biomarkers for human cancer: the ...
  • 73. Neff T, Armstrong SA. Chromatin maps, histone modifica-tions and leukemia. ...
  • 74. De Caceres II, Cortes-Sempere M, Moratilla C, Macha- do-Pinilla R, ...
  • ates cisplatin resistance in non-small-cell lung cancer. On-cogene. 2010;29(11):1681-90. DOI: ...
  • 75. De Caceres II, Dulaimi E, Hoffman AM, Al-Saleem T, Uzzo ...
  • 76. Ibragimova I, Ibanez de Caceres I, Hoffman AM, Potapo- va ...
  • 77. Reinstein E. Challenges of using next generation sequenc‌ing in newborn ...
  • 78. Avent ND, Webb A, Madgett TE, Miran T, Sillence K, ...
  • 79. Mujezinovic F, Alfirevic Z. Procedure-related complications of amniocentesis and chorionic ...
  • 80. Go ATJI, van Vugt JMG, Oudejans CBM. Non-invasive aneuploidy detection ...
  • 81. Hahn S, Lapaire O, Tercanli S, Kolla V, Hosli I. ...
  • 82. Illanes S, Denbow M, Kailasam C, Finning K, Soothill PW. ...
  • 83. Lo YM, Corbetta N, Chamberlain PF, Rai V, Sargent IL, ...
  • 84. Chen EZ, Chiu RW, Sun H, Akolekar R, Chan KC, ...
  • 85. Fan HC, Blumenfeld YJ, Chitkara U, Hudgins L, Quake SR. ...
  • 86. Kotsopoulou I, Tsoplou P, Mavrommatis K, Kroupis C. Non-invasive prenatal ...
  • 87. Gonzalez-Garay ML. The road from next-genera‌tion sequencing to personalized medicine. ...
  • 88. Beigh MM. Next-Generation Sequencing: The Translation- al Medicine Approach from ...
  • 89. Chan IS, Ginsburg GS. Personalized medicine: progress and promise. Annu ...
  • 90. Mathur S, Sutton J. Personalized medicine could transform healthcare. Biomed ...
  • 91. Claret FX, Vu TT. Trastuzumab: updated mechanisms of ac-tion and ...
  • 92. Marchetti A, Del Grammastro M, Filice G, Felicioni L, Rossi ...
  • 93. Bertelli C, Greub G. d. Clin Microbiol Infect. 2013;19(9):803-13. DOI: ...
  • 94. Deurenberg RH, Bathoorn E, Chlebowicz MA, Couto N, Ferdous M, ...
  • 95. Zhou K, Ferdous M, de Boer RF, Kooistra-Smid AM, Grundmann ...
  • 96. Falgenhauer L, Waezsada SE, Yao Y, Imirzalioglu C, Kas- bohrer ...
  • 97. Hasman H, Hammerum AM, Hansen F, Hendriksen RS, Olesen B, ...
  • 98. Kluytmans-van den Bergh MF, Huizinga P, Bonten MJ, Bos M, ...
  • 99. Nijhuis RH, Oueslati S, Zhou K, Bosboom RW, Rossen JW, ...
  • 100. Hasman H, Saputra D, Sicheritz-Ponten T, Lund O, Svend- sen ...
  • 101. Bragg L, Tyson GW. Metagenomics using next-generation sequencing. Methods in ...
  • 102. Auburn S, Campino S, Clark TG, Djimde AA, Zongo I, ...
  • 103. Kuroda M, Sekizuka T, Shinya F, Takeuchi F, Kan- no ...
  • 104. Rasko DA, Worsham PL, Abshire TG, Stanley ST, Bannan JD, ...
  • 105. Lappin E, Ferguson AJ. Gram-positive toxic shock syn-dromes. Lancet Infect ...
  • نمایش کامل مراجع