Cell Segmentation Comprehensive Algorithm in 3D Microscopic Images Based on Inverse Wavelet Transform

Publish Year: 1394
نوع سند: مقاله کنفرانسی
زبان: English
View: 897

This Paper With 9 Page And PDF Format Ready To Download

  • Certificate
  • من نویسنده این مقاله هستم

استخراج به نرم افزارهای پژوهشی:

لینک ثابت به این Paper:

شناسه ملی سند علمی:

ITCC02_001

تاریخ نمایه سازی: 21 شهریور 1395

Abstract:

The correct and detailed segmentation of cells are very critical for cellular dynamic observation in biologic. The provided novel algorithm Cell Segmentation Comprehensive Algorithm (CSCA) is a comprehensive and full automatic without away type and number of cells limitation for segmentation based on a novel method by inverse wavelet transform. In our algorithm, first 3D image slices are preprocessing separately. Then every noise slice is decreased by passing off a BM3D filter with optimum parameters. So, after histogram equalization in every slice image, we decreased the image background by a new method that passing in parallel of different Gaussian filter and subtract two images filtered by Gaussian filter. Then in the next stage, the object edges are recognized by using Gradient Vector Flow (GVF) and morphological operators, then corresponding novel formula with image structure data is used for omitting the picture omissions. Finally, by applying 2D wavelet transform from each slice, every four components of 2D wavelet transform in a matrix are stored separately and after processing of all slices and saving in four 3D matrixes. Then it is converted to 3D image by using 3D inverse wavelet transform in four matrixes. Finally, we detect and segment all of the cells that are inside or interface of frames 3D as a visual frame. The given algorithm on data has been tested with accuracy rate of 97.22%.

Authors

Vahid Khodadadi

Department of Biomedical Engineering, Science and Research Branch, Islamic Azad University, Tehran, Iran

Morteza Behnam

Department of Electrical Engineering, Najafabad Branch, Islamic Azad University, Najafabad, Isfahan, Iran.

Pooyan Alinaghi Hosseinabadi

Department of Electrical Engineering, Najafabad Branch, Islamic Azad University, Najafabad, Isfahan, Iran

مراجع و منابع این Paper:

لیست زیر مراجع و منابع استفاده شده در این Paper را نمایش می دهد. این مراجع به صورت کاملا ماشینی و بر اساس هوش مصنوعی استخراج شده اند و لذا ممکن است دارای اشکالاتی باشند که به مرور زمان دقت استخراج این محتوا افزایش می یابد. مراجعی که مقالات مربوط به آنها در سیویلیکا نمایه شده و پیدا شده اند، به خود Paper لینک شده اند :
  • Z. Yin, R. Bise, M. Chen, and T. Kanade, "Cell ...
  • novel cell segmentation Aه [10] X. Zhou, F. Li, J. ...
  • B. Ergeest, J. Philip, and K. Rohr, "Segmentation of cell ...
  • Imaging (ISBI), p. 637-640, May 2014. ...
  • P. Fister, S. Sabina, B. Marion, D. Colette, and D.R. ...
  • F. Meyer, S. Beucher, "Morphological segmentation, " Journal of visual ...
  • National Confercncc on New Technologies Application in Engineering ل"3 2"" ...
  • D. McCullough, R. Prabhakar, B.S. Harris, J. Collins, K. Meaburn, ...
  • Y. Boykov and M. Jolly, "Interactive graph cuts for optimal ...
  • G. Lin, M. Chawla, K. Olson, C. Barnes, J. Guzowski, ...
  • M. Maska, O. Danek, S. Garasa, A. Rouzaut, A. Munoz-B ...
  • D. Padfield, J. Rittscher, N. Thomas, and B. Roysam, _ ...
  • G. Lin, M. Chawla, K. Olson, J. Guzowski, C. Barnes, ...
  • A. Dufour, V. Shinin, S. Tajbakhsh, N. Guillen-Aghion, J. Olivo-Marin, ...
  • G. Li, T. Liu, A. Tarokh, J. Nie, L. Guo, ...
  • C.Zanella, M. Campana, B. Rizzi, C. Melani, G. Sanguinetti, P, ...
  • C. Zhang, C. Sun, and T. Pham, "Clustered nuclei splitting ...
  • Dataset: _ codesolorzano .com ...
  • D. An oraganingrum, "Cell segmentation with median filter and mathematical ...
  • X.Yang and D. Padfield, _ _ Wave let-initialized 3D level-set ...
  • K. Jiang, QO. Liao, and S. Dai, _ novel white ...
  • F. Zamani and R. Safabakhsh, _ unsupervised GVF snake approach ...
  • P. Quelhas, M. Marcuzzo, A. Mendonca, and A. Campilho, "Cell ...
  • _ Liao and Y. Deng, _ accurate segmentation method for ...
  • J. Sharif, M.F. Miswan, M.A. Ngadi, M. Hi Salam, and ...
  • _ _ e _ _ _ Transactions, .vol. 56, pp.741-748, ...
  • X. Yang, H. Li, and X. Zhou, "Nuclei segmentation using ...
  • نمایش کامل مراجع